30 lines
1.0 KiB
Plaintext
30 lines
1.0 KiB
Plaintext
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#!/bin/bash
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echo "Hello, output-43207!"
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cd /data
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source ~/.bashrc
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export PYTHONPATH=/usr/local/python3/lib/python3.8/site-packages:$PYTHONPATH
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cpac run /data/ABIDEII-EMC_1 ${outPath} participant --pipeline_file /data/config/default.yml --data_config_file ${dataInfoPath} --mem_gb 10 --platform docker
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echo "cpac handle end!"
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conda activate myenv
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export PYTHONPATH=/root/anaconda3/envs/myenv/lib/python3.7/site-packages:$PYTHONPATH
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python ${alignPath}
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python /data/test2.py --sub_id ${subId} --TR ${tr} --root_dir ${fucDataPath} --out_dir ${fmriOutPath} --anat_dir ${anatPath}
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echo "fmri handle end!"
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cp Node_AAL116.node config.mat config2.mat config3.mat config4.mat BrainMesh_Ch2withCerebellum.nv main.py modelViewGeneral.py rtmalbFile.m brain_regions.npy number_change_script.py extract_regions.py ${matrixPath}
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cd ${matrixPath}
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python main.py --sub_id ${subId} --root_dir ${fmriOutPath} --module_dir /data/config/models_9_9 --matrix_path ${matrixPath}
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python number_change_script.py
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python extract_regions.py
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echo "main handle end!"
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