2025-02-06 15:43:56 +08:00
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#!/bin/bash
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cd /data
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cd /data
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echo "执行源文件处理脚本"
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2025-02-28 23:30:45 +08:00
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python dealTest.py --base_dir ${playground} --output_dir ${playground}/BIDS_output --json_dir ${playground}/BIDS_output/sub-001/func/
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2025-02-06 15:43:56 +08:00
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rm -rf ./${playground}/BIDS_output/config.json
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cp ./README ${playground}/BIDS_output/
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echo "通过源文件进行二次处理"
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docker run --rm -e DOCKER_VERSION_8395080871=27.3.1 -v /data/license.txt:/opt/freesurfer/license.txt:ro -v /data/${playground}/BIDS_output:/data:ro -v /data/${playground}/preprocessed:/out nipreps/fmriprep:23.2.3 /data /out participant --participant-label 001 --fs-no-reconall
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