From 5044a7675e690046b95afb8ed08c1182a8ab9ed3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E6=9C=B1=E6=98=A5=E4=BA=91?= <1994398261@qq.com>
Date: Thu, 4 Sep 2025 17:50:40 +0800
Subject: [PATCH] =?UTF-8?q?bug=20=E5=A4=84=E7=90=86?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .../src/main/resources/static/alignTemplate.ftl    | 14 +++++++-------
 ruoyi-admin/src/main/resources/static/cpacSh.ftl   |  4 +---
 ruoyi-admin/src/main/resources/static/dealData.ftl | 10 ++++------
 3 files changed, 12 insertions(+), 16 deletions(-)

diff --git a/ruoyi-admin/src/main/resources/static/alignTemplate.ftl b/ruoyi-admin/src/main/resources/static/alignTemplate.ftl
index 15332fe..baae160 100644
--- a/ruoyi-admin/src/main/resources/static/alignTemplate.ftl
+++ b/ruoyi-admin/src/main/resources/static/alignTemplate.ftl
@@ -2,21 +2,21 @@ import os
 # This script can align cpac output and AAL template to the same space
 
 temp_file = '/data/Atlas/AAL_61x73x61_YCG.nii'
-fmri_file_mb = '${fmriFileMb}'
-fmri_reg_out_file = '${fmriRegOutFile}'
+fmri_file_mb = '/data/${fmriFileMb}'
+fmri_reg_out_file = '/data/${fmriRegOutFile}'
 system_str_mb = f"flirt -ref {temp_file} -in {fmri_file_mb} -dof 6 -omat {fmri_reg_out_file}"
 print(system_str_mb)
 os.system(system_str_mb)
 
-fmri_file_dpp = f"${fmriFileDpp}"
-fmri_r2t1_out_file = "${fmriR2t1OutFile}"
+fmri_file_dpp = f"/data/${fmriFileDpp}"
+fmri_r2t1_out_file = "/data/${fmriR2t1OutFile}"
 system_str_dpp = f"applywarp -i {fmri_file_dpp} -r {temp_file} -o {fmri_r2t1_out_file} --premat={fmri_reg_out_file} --interp=spline"
 print(system_str_dpp)
 print("***Please wait for a moment***")
 os.system(system_str_dpp)
 
-smri_file_mb = '${smriFileMb}'
-smri_reg_out_file = '${smriOutFile}'
+smri_file_mb = '/data/${smriFileMb}'
+smri_reg_out_file = '/data/${smriOutFile}'
 system_str_mb = f"flirt -ref {temp_file} -in {smri_file_mb} -dof 12 -out {smri_reg_out_file} "
 print(system_str_mb)
-os.system(system_str_mb)
\ No newline at end of file
+os.system(system_str_mb)
diff --git a/ruoyi-admin/src/main/resources/static/cpacSh.ftl b/ruoyi-admin/src/main/resources/static/cpacSh.ftl
index f325adf..1398f9c 100644
--- a/ruoyi-admin/src/main/resources/static/cpacSh.ftl
+++ b/ruoyi-admin/src/main/resources/static/cpacSh.ftl
@@ -1,9 +1,7 @@
 #!/bin/bash
 echo "Hello, output-43207!"
-cd  /data
 
-
-python ${alignPath}
+python /data/${alignPath}
 
 python /data/test2.py  --sub_id ${subId}  --TR ${tr}  --root_dir ${fmriR2t1OutFile}  --out_dir ${fmriOutPath} --anat_dir ${smriOutFile}
 
diff --git a/ruoyi-admin/src/main/resources/static/dealData.ftl b/ruoyi-admin/src/main/resources/static/dealData.ftl
index c02fc78..fde4dce 100644
--- a/ruoyi-admin/src/main/resources/static/dealData.ftl
+++ b/ruoyi-admin/src/main/resources/static/dealData.ftl
@@ -1,11 +1,9 @@
 #!/bin/bash
-cd  /data
 
-cd  /data
 echo "执行源文件处理脚本"
-python dealTest.py --base_dir ${playground} --output_dir ${playground}/BIDS_output  --json_dir  ${playground}/BIDS_output/sub-001/func/
-rm -rf ./${playground}/BIDS_output/config.json
-cp ./README  ${playground}/BIDS_output/
+python dealTest.py --base_dir cd  /data/${playground} --output_dir /data/${playground}/BIDS_output  --json_dir  /data/${playground}/BIDS_output/sub-001/func/
+rm -rf /data/${playground}/BIDS_output/config.json
+cp /data/README  /data/${playground}/BIDS_output/
 echo "通过源文件进行二次处理"
 docker run --rm -e DOCKER_VERSION_8395080871=27.3.1  -v /data/license.txt:/opt/freesurfer/license.txt:ro -v /data/${playground}/BIDS_output:/data:ro -v /data/${playground}/preprocessed:/out nipreps/fmriprep:23.2.3 /data /out participant --participant-label 001 --fs-no-reconall
-python scriptAge.py --dicom_folder ${playground}
+python scriptAge.py --dicom_folder /data/${playground}