#!/bin/bash
echo "Hello, output-43207!"
cd  /data
source ~/.bashrc
export PYTHONPATH=/usr/local/python3/lib/python3.8/site-packages:$PYTHONPATH
cpac run /data/ABIDEII-EMC_1   ${outPath}  participant --pipeline_file  /data/config/default.yml --data_config_file  ${dataInfoPath} --mem_gb 10  --platform docker

echo "cpac handle end!"

conda activate myenv

export PYTHONPATH=/root/anaconda3/envs/myenv/lib/python3.7/site-packages:$PYTHONPATH

python ${alignPath}

python /data/test2.py  --sub_id ${subId}  --TR ${tr}  --root_dir ${fucDataPath}  --out_dir ${fmriOutPath} --anat_dir ${anatPath}

echo "fmri handle end!"

cp Node_AAL116.node config.mat config2.mat config3.mat config4.mat BrainMesh_Ch2withCerebellum.nv main.py modelViewGeneral.py rtmalbFile.m brain_regions.npy number_change_script.py extract_regions.py  ${matrixPath}

cd ${matrixPath}

python  main.py  --sub_id  ${subId}  --root_dir  ${fmriOutPath}  --module_dir /data/config/models_9_9  --matrix_path   ${matrixPath}

python number_change_script.py
python extract_regions.py

echo "main  handle end!"