#!/bin/bash
cd  /data

cd  /data
echo "执行源文件处理脚本"
python dealTest.py --base_dir ${playground} --output_dir ${playground}/BIDS_output  --json_dir  ${playground}/BIDS_output/sub-001/func/sub-001_task-rest_bold.json
rm -rf ./${playground}/BIDS_output/config.json
cp ./README  ${playground}/BIDS_output/
echo "通过源文件进行二次处理"
docker run --rm -e DOCKER_VERSION_8395080871=27.3.1  -v /data/license.txt:/opt/freesurfer/license.txt:ro -v /data/${playground}/BIDS_output:/data:ro -v /data/${playground}/preprocessed:/out nipreps/fmriprep:23.2.3 /data /out participant --participant-label 001 --fs-no-reconall